PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038266m
Common NameCISIN_1g038266mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 242aa    MW: 27586.4 Da    PI: 8.0773
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038266mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.5e-162771898
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +pk f+ ++g+++  s + tl++++g +W+v +  +k +g+++l +GW +Fvk++ +++  f+vFk+ ++s+f   v +f+
  orange1.1g038266m  2 IPKAFVGRFGYEE-LSSDATLKTPNGCVWQVGV--TKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTF--DVLIFD 77
                       9*****9999885.667****************..********************************999998..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.155179IPR003340B3 DNA binding domain
CDDcd100174.71E-15277No hitNo description
Gene3DG3DSA:2.40.330.104.0E-19281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17281IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-13276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
KIPKAFVGRF GYEELSSDAT LKTPNGCVWQ VGVTKDKGKI WLDDGWHHFV KDHSICVAYF  60
LVFKYAKNST FDVLIFDMTA CEIDYPYHRG QPNKEEQNSI HDDEMQCENS TKKLGFRASC  120
KNQMHHSQGS LHYKRLLNGT AGNFSRPSSA VQDDHQTEFV DGQALSALLE EMGISISRSC  180
LSLEAEERHR VITAARLFEP RNPSFMVIVR GNERRKAYLF IPIKFVNNYL CEVPKFIKVQ  240
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166790.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479391.11e-169B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_024034934.11e-169B3 domain-containing transcription factor VRN1
TrEMBLA0A067EAH50.0A0A067EAH5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006479391.11e-169(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3331622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-30B3 family protein