PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038156m
Common NameCISIN_1g038156mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 439aa    MW: 49212.1 Da    PI: 6.2958
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038156mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.31.7e-23184237155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k++l Wt+eLH++F++av+ L G++ A Pk+il++m+v+gL  e++ SHLQkYRl
  orange1.1g038156m 184 KQKLTWTSELHNKFLQAVRVL-GIDGAHPKKILQHMNVPGLKKENISSHLQKYRL 237
                        79*******************.********************************8 PP
2Response_reg501.6e-1791171109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vli+d + + + +l ++l+  gy ev +a+ + +a   +  ++ + D+il    +p+md +ell++ re + klp+i+++a ++e+d+l al
  orange1.1g038156m   9 VLIMDGDSTCLVILSKMLRWFGY-EVLTAKRAADAFYVVrgCADELDIILAETHLPDMDKYELLETVREMS-KLPVIFMSADDNENDMLGAL 98 
                        89*********************.***************666677************************99.******************** PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga+ +l+Kp++++++ +
  orange1.1g038156m  99 FKGADFYLVKPISMSDIKN 117
                        *************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-255124IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-266154No hitNo description
SMARTSM004487.9E-177119IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.0438123IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-139117IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.07E-1910123No hitNo description
SuperFamilySSF466892.96E-17182241IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-24183241IPR009057Homeodomain-like
PROSITE profilePS512949.353183240IPR017930Myb domain
TIGRFAMsTIGR015571.4E-20184237IPR006447Myb domain, plants
PfamPF002491.3E-6187236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLPPRGISVL IMDGDSTCLV ILSKMLRWFG YEVLTAKRAA DAFYVVRGCA DELDIILAET  60
HLPDMDKYEL LETVREMSKL PVIFMSADDN ENDMLGALFK GADFYLVKPI SMSDIKNLWQ  120
FAFTKKTDKM VATEGVSSIS SDDTDNHILP NKWKKSHQDP KRKEATEVDK NVGGVNDDAS  180
VLKKQKLTWT SELHNKFLQA VRVLGIDGAH PKKILQHMNV PGLKKENISS HLQKYRLSLK  240
REQDAIGKTV NRDYSESQVA LCNLSSTSNI QGGLFQFPEM QTMTACHQPE VGIQEQKNDV  300
NCCILVPSAS SIHFLNNGGW SCNDTSDCKY EQLAPAINQL DFSYPCSRHA RIGITSNEKL  360
AGFHQMVKSN GEELLIGKMA SSINVDSRLD IGMQVPSSLN QQEEKDQRWQ KNFPPGPAPL  420
YPEEYDVYGA GKVELDMKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-16183241462ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491000.10.0two-component response regulator ARR2 isoform X1
RefseqXP_024044066.10.0two-component response regulator ARR2 isoform X2
TrEMBLA0A067HDR90.0A0A067HDR9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006491000.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1721079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-52response regulator 1