PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038097m
Common NameCISIN_1g038097mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 269aa    MW: 29404.3 Da    PI: 10.0825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038097mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-1576121555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+  Er+RRd+iN+++  L+el+P++      K++Ka++Le+A++Y+k Lq
  orange1.1g038097m  76 HKRYERKRRDKINKKMRALQELIPNC-----NKVDKASMLEEAIDYLKTLQ 121
                        8999*********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.54E-1565124No hitNo description
SuperFamilySSF474591.24E-1868131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1868129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.97771120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-1376121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1477126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0010017Biological Processred or far-red light signaling pathway
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
LDAGKCIEPP VPSSSLCSLG ASNNNPACNT FNLKRRYEDT EGSACPCDQY EKKLERKAVT  60
VRGSKSNRKK RTPEVHKRYE RKRRDKINKK MRALQELIPN CNKVDKASML EEAIDYLKTL  120
QFQVMMMSMG TGVCMPSMML PTGIIGMQQM HAVAPQMSHF PPMGIGMDGR MQMGAGCNPA  180
QFLMPPIPGA TAVPGIQMPG FPGQPLPMSM LRTPLGLMHK TNPVAGVSRA AASMEVKDSA  240
PLTNPGDSNQ NVEINKRNVE HHKIRPSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16883KKRTPEVHKRYERKRR
27984ERKRRD
38085RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492434.10.0transcription factor APG isoform X1
RefseqXP_006492435.10.0transcription factor APG isoform X1
TrEMBLA0A067HFV30.0A0A067HFV3_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5NXV80.0A0A2H5NXV8_CITUN; Uncharacterized protein
STRINGXP_006492434.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46970.13e-39phytochrome interacting factor 3-like 1