PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038084m
Common NameCISIN_1g038084mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 282aa    MW: 31512.7 Da    PI: 7.1313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038084mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-14100148355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  orange1.1g038084m 100 EMHILTERERRKKMRNMFSNLHALLPHL----PPKADKSTIVDEAVKYIKTLQ 148
                        57999**********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.90E-1396149No hitNo description
SuperFamilySSF474591.2E-1596165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.46997147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1598161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11100148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.84E-5237276No hitNo description
PROSITE profilePS516719.071237282IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAWFLVIFFD DNGHCHIIMA CAAQNNLRVN SSFDVSGGDS GSEEIRLEIM KRPDNSRTHS  60
PTTAKMETTP AEAEEQARAQ VGKKRSGNGK AVSGGESEHE MHILTERERR KKMRNMFSNL  120
HALLPHLPPK ADKSTIVDEA VKYIKTLQHT HQTLEKQKFE KVQGATTVDH EQSIIASPLE  180
AVVESREAYL ADHLGSSVPK NLSMAANIHH SLQVPSDCFQ TWFSPNVVVN MCGDDAQISV  240
CSPRKPGLLT TIFYILEKHN LDVVSAHVSS DRYRSMYMIH AH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384271.11e-170transcription factor bHLH95-like
TrEMBLA0A067GWX60.0A0A067GWX6_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006434734.11e-160(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-39bHLH family protein