PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037987m | ||||||||
Common Name | CISIN_1g037987mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 143aa MW: 16277.5 Da PI: 8.721 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.5 | 3.8e-17 | 34 | 120 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++Y+++ GF v+k +skk+ +++++ +tf C ++gk+++++++ + +++ +tgC+ k+ +++gkw + +l+l+H H l+p orange1.1g037987m 34 EFYKAYGRQEGFPVKKLTSKKR-SDKTVKYATFACGRSGKADSRSTN---LLKLKPVVKTGCESKIGGCVNEEGKWILRTLNLQHDHGLSP 120 6***************998886.7788****************9988...88999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-14 | 34 | 120 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MENFENERAI EDVRLEKFEP TLGMLFDGYE EMFEFYKAYG RQEGFPVKKL TSKKRSDKTV 60 KYATFACGRS GKADSRSTNL LKLKPVVKTG CESKIGGCVN EEGKWILRTL NLQHDHGLSP 120 DKERYFPCNH RISASEQARC AL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386695.1 | 2e-98 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067ENV2 | 1e-102 | A0A067ENV2_CITSI; Uncharacterized protein | ||||
STRING | XP_006480513.1 | 1e-78 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17343 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 5e-12 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037987m |