PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037956m | ||||||||
Common Name | CISIN_1g037956mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 28215.7 Da PI: 8.2015 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W+ +++ g+ R++k+c++rw +yl orange1.1g037956m 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 799*****************99**********99************97 PP | |||||||
2 | Myb_DNA-binding | 62.9 | 6.3e-20 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eEde ++++++qlG++ W++Ia++++ gRt++++k++w++ orange1.1g037956m 67 RGNFTQEEDETIIKLHEQLGNR-WSAIASRLP-GRTDNEIKNHWHS 110 89********************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.331 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.44E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.67E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.119 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.29E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVKAGGSEKP SLRKGSWTPE EDRKLIAYIR RYGIWNWSEM PKYAGLLRCG KSCRLRWMNY 60 LRPDIRRGNF TQEEDETIIK LHEQLGNRWS AIASRLPGRT DNEIKNHWHS RLSKKRLTKN 120 NQQQVPSVTK SLQETQTAAI FEFDEANKQN QNPPEILIAD PIPIIPNNSR EPPKVLTGCT 180 SPSPQLSADN CSSSTSYVSA NYEEIYKIQS SKVSNYDHPS ENLDELHNFW EQPFTVDTLC 240 MTMAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-31 | 10 | 115 | 23 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024951267.1 | 0.0 | transcription factor MYB14-like | ||||
Swissprot | Q9SJX8 | 1e-54 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A067GJW7 | 0.0 | A0A067GJW7_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006467925.1 | 1e-170 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 4e-57 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037956m |
Publications ? help Back to Top | |||
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