PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037856m | ||||||||
Common Name | CISIN_1g037856mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 29093.8 Da PI: 7.0999 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.2 | 9e-06 | 144 | 183 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq orange1.1g037856m 144 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 183 7999**************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.036 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-8 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.71E-5 | 144 | 187 | No hit | No description |
SuperFamily | SSF47459 | 9.68E-10 | 144 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
TNVHRNDFLM DSKLSKDDNQ LRDGGFAISY QSLVNCQQGI QSITTSCDNV SPQSFLLSRM 60 RSLPQFDVDF ESQQNERTHA IEATDLLPQE GVCANLALNK AALKVSKKIN NKKKTKLNSF 120 CEEQWRHQVN DTTTRIQEHR VPVRRSQKLS DKITALQKLV SPYGKTDTAS VLQEASLYIK 180 LLQEQIQNLF QMLSGSYNSL QVQVQVLHSL EMGEEQLDLR SRGLCLVPIS FSQKVTQEDL 240 LESHSTSRNT MVDTEF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024957130.1 | 0.0 | transcription factor bHLH133-like isoform X2 | ||||
TrEMBL | A0A067FK52 | 0.0 | A0A067FK52_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006486499.1 | 1e-163 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17246 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 7e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037856m |