PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037828m | ||||||||
Common Name | CISIN_1g037828mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 190aa MW: 21721.7 Da PI: 9.9222 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.5 | 9.4e-18 | 85 | 174 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YAk GF vrk++++ ng+++ r++vCs+eg++ + + t+++r r+ trtgC+a l++ ++ +g w t l HnH+l+ orange1.1g037828m 85 LYFLYAKLKGFGVRKDAKRID-GNGKVKGRRWVCSREGFKPCKYLEnTNRKRAARPLTRTGCRAGLRILFDEkKGAWISTILTAYHNHNLT 174 6889***********998776.8999**************9987664788999***************998889**************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.2E-16 | 85 | 174 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDDVNGSVLV FVKFDGDEHY IGRVYLELWT WYGLVANTLG RRALPNETST NPQSGIIQQE 60 ATYEMLENRF AVGSEFANED EAESLYFLYA KLKGFGVRKD AKRIDGNGKV KGRRWVCSRE 120 GFKPCKYLEN TNRKRAARPL TRTGCRAGLR ILFDEKKGAW ISTILTAYHN HNLTLPHHVH 180 YIRAHRKVS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043032.1 | 1e-94 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067ETT4 | 1e-139 | A0A067ETT4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4S321 | 1e-133 | V4S321_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006428533.1 | 1e-134 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32991 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-16 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037828m |