PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037798m
Common NameCISIN_1g037798mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 688aa    MW: 76133 Da    PI: 4.7227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037798mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-14485531455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  orange1.1g037798m 485 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 531
                        7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-5410187IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.809481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-18482540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11485530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-18485541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-16485535No hitNo description
SMARTSM003531.4E-17487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MDAPPPSSRL QSILQEAVQS VQWTYSLFWQ ICPQQGILIW GDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYESL SAGETNQPTR RPSAALSPED LTESEWFYLM CVSFSFPSGV  120
GLPGKAYARQ QHVWLTGANE VDSKTFSRAI LAKTVVCIPF LDGVVELGTT EKVPEDLALV  180
QHVKSLFIDD HQGHLHPPKP ALSEHSTSNP DTSSCHLRFH SQSMSPMCAA VNDDPPVNAN  240
QGEDDDEEED DDDDDEEQDQ SDSEAETGRN SRQGAADQIP EAVVPPVPEP SELMQLDMSE  300
DIRLGSPDDG SNNLDSDFHL LAVSQGVNPA DDQQQRGDSH RAESSRTWPM ALQEPVMIGS  360
SLQLPPSGQI PPEEELTPED THYSQTISTI LQKQPTRWAE SSYVTYSSTQ SAFAKWTDRS  420
DHLLAVPVPV EGTSQWVLKY VLFTVPYLHS KYRDENSPKL GDVGGDPASR FRKGTGTPQD  480
EMSANHVLAE RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RKKIQDLESR  540
NINNQILEGD QRSRSADGSK DQRVLDRNAR VGSGKRKLRK VEGSGGGAKP KSVDSPPPPV  600
ATSVQVSIIE SDALVELQCG NKEGLLLDIM QMLRELLIEV TAVQSFLTNG VFTAQLRAKV  660
KDNVNGKKAS IVEVKRAINQ IIPQYVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-22918712192Transcription factor MYC3
4rqw_B2e-22918712192Transcription factor MYC3
4rs9_A2e-22918712192Transcription factor MYC3
4yz6_A2e-22918712192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494ERRRRE
2490495RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7573500.0KT757350.1 Citrus sinensis bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479737.10.0basic helix-loop-helix protein A isoform X2
RefseqXP_024045500.10.0basic helix-loop-helix protein A isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A067FZZ40.0A0A067FZZ4_CITSI; Uncharacterized protein
STRINGXP_006479736.10.0(Citrus sinensis)
STRINGXP_006444093.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.16e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]