PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037785m
Common NameCISIN_1g037785mg, LOC102620654
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 366aa    MW: 40772.7 Da    PI: 6.9632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037785mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14176222354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  orange1.1g037785m 176 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 222
                        79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-12176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15177231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14177229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-5186225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MCGLKEEDQG QCSQTIHNLQ SYQEQLFLHH QQQQQQQQMH QQQLQQHHHH HHQQQQRGGL  60
IIPEVSPILP WSLTQVHSFN PAHFGPNPVR EHDPFVLPPP PPPPPTTSYG SLINRSRAPA  120
LQFAYDGSST HDHLRIISDT LGPMVQPGSA PFGLQAELNK MTAQEIMDAK ALAASKSHSE  180
AERRRRERIN NHLAKLRSLL PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ETSPVPTEMD  240
ELTVDASDED GKFVIKASLC CEDRSDLLPD LIKSLKALRL RTLKAEITTL GGRAKNVLFI  300
TADDQDSSCS SAAGEQHQQQ QQQYSISSIE EALKAVMEKT SGDESSSGSV KRQRTNINNL  360
EHRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484404.10.0transcription factor bHLH30 isoform X1
SwissprotQ9S7Y11e-108BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A067FRV60.0A0A067FRV6_CITSI; Uncharacterized protein
TrEMBLA0A2H5P3W90.0A0A2H5P3W9_CITUN; Uncharacterized protein
STRINGXP_006484404.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]