PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037442m | ||||||||
Common Name | CISIN_1g037442mg, LOC102615185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 20260.4 Da PI: 8.7159 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.1 | 3.5e-21 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++++ rqvtfskRrng++KKA+EL +LC+a +a+++fs+ gk orange1.1g037442m 10 MVKDSNSRQVTFSKRRNGLFKKANELATLCAAHIAIVVFSPGGK 53 5789999**********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.58E-27 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.198 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.5E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.02E-32 | 2 | 71 | No hit | No description |
PRINTS | PR00404 | 3.6E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MGRRKIEMKM VKDSNSRQVT FSKRRNGLFK KANELATLCA AHIAIVVFSP GGKPFSFGHP 60 SVDVVVQRLL NWEMDPKDET NSHVDAEQEA KVEQLNEQLI DLVNQLEIEK KRGEMLDKAL 120 KAKGLSKYCK KSINDLGLDE LLHMKASLEK LRENLKSHID DMEASSSLLL LKGATKENDG 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-16 | 1 | 98 | 1 | 91 | MEF2C |
5f28_B | 8e-16 | 1 | 98 | 1 | 91 | MEF2C |
5f28_C | 8e-16 | 1 | 98 | 1 | 91 | MEF2C |
5f28_D | 8e-16 | 1 | 98 | 1 | 91 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269|PubMed:20631316}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468192.2 | 1e-129 | agamous-like MADS-box protein AGL29 | ||||
Swissprot | O64703 | 2e-47 | AGL29_ARATH; Agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A067GET8 | 1e-128 | A0A067GET8_CITSI; Uncharacterized protein | ||||
STRING | XP_006468192.1 | 1e-129 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-50 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037442m |
Entrez Gene | 102615185 |
Publications ? help Back to Top | |||
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