PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037347m | ||||||||
Common Name | CISIN_1g037347mg, LOC102621525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32762.3 Da PI: 4.7657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 137 | 187 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f+taeeAa a+++a+++++g orange1.1g037347m 137 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAALAYDKAALRIRG 187 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 136 | 196 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.09E-31 | 137 | 195 | No hit | No description |
PROSITE profile | PS51032 | 23.973 | 137 | 195 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.4E-15 | 137 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-23 | 137 | 196 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-38 | 137 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 161 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MATQKNDHDA VPESILENVW ANFIGSSEDG RIQRSGTSDA SEFSKSSSWE EMPSLDGSVE 60 ILERLPSLGR WISMGAEAWE ELLDGIIPTT KESYKCNTTG DDSKICRINS NTASSAEPGP 120 NKMNAMRVEK VATPTRHYRG VRRRPWGKYA AEIRDSSRKG ARVWLGTFDT AEEAALAYDK 180 AALRIRGPKA HLNFPLEEVA NNAMATEFSG AGFNDLSMMT ISQENDNISS SRNRKRASRE 240 WEYQNIGATN YTMIDEPATP IKRTASMESA FGHELDVLEF QDLGSEYLDS LLSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-27 | 136 | 197 | 4 | 65 | ATERF1 |
3gcc_A | 1e-27 | 136 | 197 | 4 | 65 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488026 | 2e-38 | AM488026.2 Vitis vinifera contig VV78X209729.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468209.1 | 0.0 | ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A067GGI3 | 0.0 | A0A067GGI3_CITSI; Uncharacterized protein | ||||
STRING | XP_006468209.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 4e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037347m |
Entrez Gene | 102621525 |