PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g037247m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

YABBY

Protein Properties

Length: 197aa MW: 22726.6 Da PI: 10.0362

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037247m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	109.2	7.5e-34	22	115	80	168
YABBY 80 enlksnvekeesa.stsvssekl..senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 e++++ +++ +++ ++ s + l s+ne+e++ v + v++PPekrqr+Psaynrfikeei+r+k++nP+++h+eafs+aaknWa P+i orange1.1g037247m 22 EEFRKEEVQADQKaFNKFSPSILtsSDNEEEDTGSVINhvVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPI 113 33333333332220222222222445555555555444459*************************************************99 PP YABBY 167 hf 168 + orange1.1g037247m 114 QH 115 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.8E-33	20	115	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-9	60	112	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.2E-6	64	113	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPLYLLYTPF QKFPHSSKMP KEEFRKEEVQ ADQKAFNKFS PSILTSSDNE EEDTGSVINH 60 VVNKPPEKRQ RAPSAYNRFI KEEIRRLKTE NPNMAHKEAF STAAKNWAQC PPIQHKGDGE 120 SCGGQEEEKR AWNFEATDRV HVQGNGFRER KAPRHSFRAR KMLLEMRFEH FTSSSSRRVS 180 TDKKEAPAFR ELLVSG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438330.2	1e-102	axial regulator YABBY 4 isoform X2
Swissprot	Q9LDT3	2e-34	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A067H3S4	1e-127	A0A067H3S4_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006483897.1	1e-101	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	9e-37	YABBY family protein

Link Out ? help Back to Top
Phytozome	orange1.1g037247m

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]