PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037241m
Common NameCISIN_1g037241mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 306aa    MW: 33327.7 Da    PI: 8.1107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037241mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13103146855
                        HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         Er RR+++++ f++L +llP++     +K +K++i+ +Av YIk Lq
  orange1.1g037241m 103 TERERRKKMRNMFANLHSLLPQL----PPKADKSSIVDEAVSYIKTLQ 146
                        6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.40E-1394150No hitNo description
PROSITE profilePS5088814.39995145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1696163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1599157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-11103146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9103151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021163.68E-4240296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MPEDEGGGGG GEGGLLHEGF FMENPAWAPL VSDTTLAPPQ PSSSKIPKLN KKQETSQGSS  60
KKRARGEGGG EVGKDGNLLK GSDDKKAVKV KEGESEHEIH IWTERERRKK MRNMFANLHS  120
LLPQLPPKAD KSSIVDEAVS YIKTLQQTLR KLQKQKLERL QGVASFGFEA SAAITPQNKL  180
AIVAHDHQQG SSSNLLGANS TDATNNSSNL LSVSPTYPVI FQTWTSSNVV LNICGDEAHI  240
SICSPKKPGM FSTICYVLEK HKIEVISAQV SSDLTRRMYM IQVHVNGASD QFSEALPVEE  300
MYKQAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024957714.10.0transcription factor bHLH95-like
TrEMBLA0A067EX720.0A0A067EX72_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006487071.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-22bHLH family protein