PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037150m
Common NameCISIN_1g037150mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 347aa    MW: 39378.8 Da    PI: 5.6124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037150mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.63.3e-29910633128
                NAM  33 vikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121
                         i +v++yk+ P +L+ +  k +eke++fF++rd+k+++g+r+nr+t   sg+Wkat  dkev+  +ge +g kktL+fyk +++++ekt+W
  orange1.1g037150m   9 RIMDVQLYKFSPAQLEvMYKKRREKEMFFFTQRDRKHQNGSRPNRVTGdsSGFWKATSGDKEVKF-NGEIIGFKKTLAFYKRTSNSTEKTNW 99 
                        5899***********94444557789*******************998779*************9.999*********************** PP

                NAM 122 vmheyrl 128
                        +mhe+r+
  orange1.1g037150m 100 IMHEFRA 106
                        *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.7291132IPR003441NAC domain
SuperFamilySSF1019412.22E-352132IPR003441NAC domain
PfamPF023659.9E-1316105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNEPLPPNRI MDVQLYKFSP AQLEVMYKKR REKEMFFFTQ RDRKHQNGSR PNRVTGDSSG  60
FWKATSGDKE VKFNGEIIGF KKTLAFYKRT SNSTEKTNWI MHEFRAEDNP PPSKKHGIDM  120
KLDWVLCRIY HRGSKSKRAD QASEEDQYHG DDQSVDQPIQ LNPNINELVV ISREYNNPSM  180
EMEKPPSILP QEGQSFVEIS QSGNPMQNNA IATNTQYANP SHDNTLANDN VAANFTQHAD  240
PSQNNSLDPN AFVSAMQFSS DIPYNYANAS SLDNMHHQLP LQSGFLEIAQ PSNSMIAMDA  300
ELQAFAVITE SLLSPLPQAS VYPFKSSYAR NDPLWMPTLP EFQNDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-301013849171NO APICAL MERISTEM PROTEIN
1ut4_B3e-301013849171NO APICAL MERISTEM PROTEIN
1ut7_A3e-301013849171NO APICAL MERISTEM PROTEIN
1ut7_B3e-301013849171NO APICAL MERISTEM PROTEIN
3swm_A3e-301013852174NAC domain-containing protein 19
3swm_B3e-301013852174NAC domain-containing protein 19
3swm_C3e-301013852174NAC domain-containing protein 19
3swm_D3e-301013852174NAC domain-containing protein 19
3swp_A3e-301013852174NAC domain-containing protein 19
3swp_B3e-301013852174NAC domain-containing protein 19
3swp_C3e-301013852174NAC domain-containing protein 19
3swp_D3e-301013852174NAC domain-containing protein 19
4dul_A3e-301013849171NAC domain-containing protein 19
4dul_B3e-301013849171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732KKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015383320.10.0NAC domain-containing protein 2-like
TrEMBLA0A067FDG90.0A0A067FDG9_CITSI; Uncharacterized protein
TrEMBLA0A2H5P4180.0A0A2H5P418_CITUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2558323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-33NAC family protein