PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036998m
Common NameCISIN_1g036998mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 265aa    MW: 30022.3 Da    PI: 5.2157
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036998mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.97.6e-5761331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv +yL +k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ewyfFs+rdkky++g+r+nrat++gyWkatgkd+
  orange1.1g036998m   6 LPPGFRFHPTDEELVAYYLDRKINGRTIEL-EIIPEIDLYKHEPWDLPdKsYLPGKDMEWYFFSPRDKKYPNGSRTNRATRAGYWKATGKDR 96 
                        79****************************.99**************95335556888********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v+s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  orange1.1g036998m  97 TVHS-HKQSVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                        ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-643157IPR003441NAC domain
PROSITE profilePS5100560.9896157IPR003441NAC domain
PfamPF023652.7E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING RTIELEIIPE IDLYKHEPWD LPDKSYLPGK  60
DMEWYFFSPR DKKYPNGSRT NRATRAGYWK ATGKDRTVHS HKQSVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLLDPLSGA ASSSLKDSYA LCRVFKKTIQ IPKAKESLQE AMGNNNNDAE  180
NQTETVGFSS DEQMLGDDTS GREAEENDYS KFPSDTSSSD FTQATPTEAG NVNADEFQAP  240
FISDEANSAV NMYSLGVDFT TNLIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-62115712165NO APICAL MERISTEM PROTEIN
1ut4_B9e-62115712165NO APICAL MERISTEM PROTEIN
1ut7_A9e-62115712165NO APICAL MERISTEM PROTEIN
1ut7_B9e-62115712165NO APICAL MERISTEM PROTEIN
3swm_A9e-62115715168NAC domain-containing protein 19
3swm_B9e-62115715168NAC domain-containing protein 19
3swm_C9e-62115715168NAC domain-containing protein 19
3swm_D9e-62115715168NAC domain-containing protein 19
3swp_A9e-62115715168NAC domain-containing protein 19
3swp_B9e-62115715168NAC domain-containing protein 19
3swp_C9e-62115715168NAC domain-containing protein 19
3swp_D9e-62115715168NAC domain-containing protein 19
4dul_A9e-62115712165NAC domain-containing protein 19
4dul_B9e-62115712165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1878612e-37AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422300.10.0NAC domain-containing protein 45
RefseqXP_006493742.10.0NAC domain-containing protein 45
SwissprotQ9FFI51e-85NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A067F2E60.0A0A067F2E6_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5NQR00.0A0A2H5NQR0_CITUN; Uncharacterized protein
TrEMBLV4S9K70.0V4S9K7_9ROSI; Uncharacterized protein
STRINGXP_006493742.10.0(Citrus sinensis)
STRINGXP_006422300.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.13e-99NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]