PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036963m
Common NameCISIN_1g036963mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 195aa    MW: 21800 Da    PI: 9.8622
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036963mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20655255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  orange1.1g036963m  6 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 55
                       7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-33564IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22664IPR016177DNA-binding domain
PfamPF008471.6E-14655IPR001471AP2/ERF domain
CDDcd000185.53E-20664No hitNo description
SMARTSM003806.8E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103225.014663IPR001471AP2/ERF domain
PRINTSPR003678.1E-12718IPR001471AP2/ERF domain
PRINTSPR003678.1E-122945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
NVRRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAALAYDEAA LRFKGSKAKL  60
NFPERVQANL TTHRYQDHYY HAAAATTSQQ VSNPPPPPPP RPLPLTQEVM YSNLFQYQQA  120
NYGIPSGFYG EYRYLPVTLP TTSSSSSSSS ATSSQQPQQH ELLRYGMQLE SSSSSASDPH  180
ESTRRNSDTS HPGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27569469ATERF1
3gcc_A1e-27569469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387719.11e-142ethylene-responsive transcription factor ERF113
TrEMBLA0A2H5PGU81e-141A0A2H5PGU8_CITUN; Uncharacterized protein
STRINGXP_006436961.11e-138(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2760723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.12e-22related to AP2 6l