PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036928m
Common NameCISIN_1g036928mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 367aa    MW: 40666.8 Da    PI: 5.0252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036928mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-102913311055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  orange1.1g036928m 291 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 331
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-14281345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12286340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-12287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-12290335No hitNo description
PfamPF000105.8E-8291331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDSFGVLFAD GEWESFNKMF PTEEFDFAQE FLAQAQQQQN DDEGLHFMTP SAFCPTSEAT  60
NVVSMTAGVD NESLFYYSNS TDRQLNSNLH NLSQDSNFGS NCSTSAFNNS SFFFSDISNN  120
HIPVTNAVCM SMVEEKIGLH DAPAFHDIAM EETSPINQCT TALVHAHDLQ LKRKLIDHGP  180
AEPDVNSSEN NGKKKPRVTR NVQKTTKKNA VKSKKQQNEK VRPKGNEGEE SNINGGSDGQ  240
SSTSTYSSDD DNASQETNNE DSKASSAALN LSGKQRASRG SATDPQSLYA RKRRERINER  300
LKILQNLVPN GTKVDISTML EEAVHYVKFL QVQIKLLSSD ELWMYAPLAY NGIDYLCLNQ  360
KISSLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433627.10.0transcription factor bHLH84
TrEMBLA0A067H1B80.0A0A067H1B8_CITSI; Uncharacterized protein
TrEMBLV4T1710.0V4T171_9ROSI; Uncharacterized protein
STRINGXP_006433627.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.16e-53ROOT HAIR DEFECTIVE 6-LIKE 2