PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036819m
Common NameCISIN_1g036819mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 269aa    MW: 30705.8 Da    PI: 8.7646
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036819mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.91e-23220268249
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEE CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvve 49 
                        +Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed ++++
  orange1.1g036819m 220 NDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILI 268
                        8***************************99**************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-25204269IPR003657WRKY domain
SuperFamilySSF1182902.62E-21211268IPR003657WRKY domain
PROSITE profilePS5081122.378214269IPR003657WRKY domain
SMARTSM007741.3E-23219269IPR003657WRKY domain
PfamPF031061.0E-20220268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEIDLSLKID AQEDKKPENG DQNQKVHEDR LDKKYSRDKE GEAEELSLQD ENKNKGELSV  60
LQKEMNRMKK ENTLLRKVVE QTMKDYYELQ VKLAAIQQSS QQMDISHAFL SLKGNEKAFQ  120
EPKGAAQILE TKNESPPSAS SRDDFSKRIS TELGLSLRLQ IEREEDKKDN KEVIAASFPL  180
LQKKVEQSDQ FSGHPSHVAL PPNRKARVSV RTRCQAATIN DGCQWRKYGQ KIAKGNPCPR  240
AYYRCTVAPG CPVRKQVQRC LEDMSILIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17206269163WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948583.10.0probable WRKY transcription factor 9
TrEMBLA0A067DUN60.0A0A067DUN6_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5PMM40.0A0A2H5PMM4_CITUN; Uncharacterized protein
STRINGXP_006428226.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-55WRKY DNA-binding protein 9