PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g036705m | ||||||||
Common Name | CISIN_1g036705mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24194.1 Da PI: 10.2799 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.1 | 7.5e-21 | 18 | 64 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr+g++KKA+ELS+LC++++a+i+fs+ +k + + orange1.1g036705m 18 IPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64 55677789*********************************997766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.609 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-26 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.89E-31 | 9 | 77 | No hit | No description |
PRINTS | PR00404 | 1.0E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-22 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MEMKKPCAGR QKIAISKIPK KNHLQVTFSK RRTGVFKKAS ELSTLCGIDI AIIVFSPANK 60 AFSFGHPNVD SIIDRYLARN SNPPSESGTN RLIEAHRNAN IRELNMQLTQ VLHQLEVEKK 120 HGEVMSEIRK ASRSQCWWEA PINELGLHEL EQLKTAMEEL KKNVEQQANK ILIDSKNNPS 180 PSFARALDII MIISRSFFEF CLISIKWRQL QG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-17 | 9 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
5f28_A | 3e-17 | 9 | 95 | 2 | 87 | MEF2C |
5f28_B | 3e-17 | 9 | 95 | 2 | 87 | MEF2C |
5f28_C | 3e-17 | 9 | 95 | 2 | 87 | MEF2C |
5f28_D | 3e-17 | 9 | 95 | 2 | 87 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024034811.1 | 1e-132 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-52 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067E6J4 | 1e-155 | A0A067E6J4_CITSI; Uncharacterized protein | ||||
STRING | XP_006422730.1 | 1e-150 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-55 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g036705m |
Publications ? help Back to Top | |||
---|---|---|---|
|