PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036599m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 190aa MW: 21638 Da PI: 9.4918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036599m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	26	65	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ e+ErrRR+++N+++ +Lr+l+ k ++ e A+ YI++L orange1.1g036599m 26 KNLEAERRRRQKLNDRLLKLRSLMKKE-----------TVIEDAITYIRQL 65 56799******************9987...........6777777777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-9	15	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.38E-6	24	66	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-5	24	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-4	28	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
HEPPVNQTKM REHRSDSEDK AVYKSKNLEA ERRRRQKLND RLLKLRSLMK KETVIEDAIT 60 YIRQLKGRVL FLCDQVLQVE PLEEEETKPK IDENAAEEMK NCGIEEDVKV TNMGGNKLRI 120 NIIFGKKRGN FTKLVEAMNA LGFVFGDTSV TTLKGATLFS SVLEGTHGGD RIIRVEETRE 180 LLLKIIRGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024955930.1	1e-95	uncharacterized protein LOC102624992
TrEMBL	A0A2H5NUV8	1e-122	A0A2H5NUV8_CITUN; Uncharacterized protein
STRING	XP_006482385.1	1e-120	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8358	25	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	3e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g036599m