PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036591m | ||||||||
Common Name | CISIN_1g036591mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 22976.6 Da PI: 8.8465 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G+ WktIa++ g++R++k+c++rw +yl orange1.1g036591m 11 KGAWTAEEDRKLAEVIATHGPTKWKTIAAKTGLNRCGKSCRLRWMNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.3e-16 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l orange1.1g036591m 64 RGSISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 109 788899****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.001 | 1 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 5.3E-16 | 10 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.7E-29 | 10 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-18 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-11 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.708 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 64 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 66 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.02E-10 | 68 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDKSSPATFN KGAWTAEEDR KLAEVIATHG PTKWKTIAAK TGLNRCGKSC RLRWMNYLRP 60 NIKRGSISDQ EEDLILRLHK LLGNRWSLIA GRLPGRTDNE IKNYWNSHLS KKIKNQNEKQ 120 SGVSTSEACR DEKRRATEVI AKAKAVTASE ESKANSIAEE SSNSDNISGN NGFNVDEFFD 180 FSNEDPLNLE WISRFVEPDE GFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-30 | 9 | 113 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to roots and hypocotyl. Specifically expressed in root non-hair developing cells (atrichoblasts) at the N position. Also present in lateral root cap cells. In hypocotyls, expressed within files of epidermal cells located outside a single cortical cell equivalent to roots N cells (at protein level). {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:16207757}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024958001.1 | 1e-148 | transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 3e-54 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A067FFW3 | 1e-147 | A0A067FFW3_CITSI; Uncharacterized protein | ||||
STRING | XP_006426648.1 | 1e-146 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-56 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036591m |