PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036531m
Common NameCISIN_1g036531mg, LOC102623040
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 318aa    MW: 35816.9 Da    PI: 4.9895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036531mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.7e-13124175155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  orange1.1g036531m 124 QRMTHIAVERNRRKQMNEYLSVLRSLMPDS---YVQRGDQASIIGGAINFVKELE 175
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.55E-12122179No hitNo description
Gene3DG3DSA:4.10.280.108.5E-14122179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16123188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MALEAVVYQQ DFLSYNGSKD INNLLGCPFD DHHFLENQTE SFLDGDYWNN NSTSSSPPAP  60
TPSIMVPNFN EFYSEDANAN VNANVSSILD ADHPLHQMDI TLPNNRPKRR RAKSRKNQEE  120
IENQRMTHIA VERNRRKQMN EYLSVLRSLM PDSYVQRGDQ ASIIGGAINF VKELEQRLQS  180
LGARKEIKEN SESGSTLFAE FFAFPQYSTS SSRSESEAIM SNETQNSIAD IEVNMVESHA  240
NLKIRSKRRP KQLLKLVSGL QSMRLTILHF NVTTADEIVL YSLSVKVEDD CNLTSGDDIA  300
TAVYQLLGRI QEDASLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124135RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.91210.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471948.10.0transcription factor bHLH96
SwissprotQ9C7T47e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067EWM00.0A0A067EWM0_CITSI; Uncharacterized protein
STRINGXP_006471948.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]