PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036457m | ||||||||
Common Name | CISIN_1g036457mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 399aa MW: 44949 Da PI: 4.4855 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.6e-08 | 231 | 279 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn+ Er RR ++ + L llP + +++kK s +i +A eYI +L orange1.1g036457m 231 EHNAKERVRRMKLYATYLSLGALLPDS--ESKKKRSAPAIIDRALEYIPEL 279 6*************************6..47888**************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.645 | 227 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-4 | 231 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-9 | 231 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.63E-6 | 232 | 284 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-10 | 232 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MSSPRLHNLD HEDYNVDEIP FHASDDLWQL LEDDSSFQDI NNSLDPNITF HLENSSAAEA 60 SDNNPCAPFD QEKSVFPLED DTTNCKRDSY LFLEQQNSGM AIPITEECSM TFSNKSHDTS 120 GSSDLGTFLE QESSGLEPST DTELFLQNLV NYCNDDIFSH FAEASGDPWV HGEAGCSSLP 180 LENHESSRGL ESSFLSERET SAVATPSINK ALPEKQLSAK KKERNNTTIE EHNAKERVRR 240 MKLYATYLSL GALLPDSESK KKRSAPAIID RALEYIPELE NEIEKLTLKK DNMLSKIENK 300 QRHNQNLQLE HEAPSVLVHE VEKGDVIIQI ICSPNDEKTV FSKLLQNLEA KEKGIISVST 360 LCVCEKRVCY HLHIQMQKDS LATDYVEVLR QDVISWLL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8751 | 0.0 | callus |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024951843.1 | 0.0 | uncharacterized protein LOC112497552 | ||||
TrEMBL | A0A067EHU5 | 0.0 | A0A067EHU5_CITSI; Uncharacterized protein | ||||
STRING | XP_006471125.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10558 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 6e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036457m |