PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036457m
Common NameCISIN_1g036457mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 399aa    MW: 44949 Da    PI: 4.4855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036457mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08231279454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         hn+ Er RR ++   +  L  llP +  +++kK s  +i  +A eYI +L
  orange1.1g036457m 231 EHNAKERVRRMKLYATYLSLGALLPDS--ESKKKRSAPAIIDRALEYIPEL 279
                        6*************************6..47888**************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.645227279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-4231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-9231303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-6232284No hitNo description
SuperFamilySSF474591.57E-10232298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSSPRLHNLD HEDYNVDEIP FHASDDLWQL LEDDSSFQDI NNSLDPNITF HLENSSAAEA  60
SDNNPCAPFD QEKSVFPLED DTTNCKRDSY LFLEQQNSGM AIPITEECSM TFSNKSHDTS  120
GSSDLGTFLE QESSGLEPST DTELFLQNLV NYCNDDIFSH FAEASGDPWV HGEAGCSSLP  180
LENHESSRGL ESSFLSERET SAVATPSINK ALPEKQLSAK KKERNNTTIE EHNAKERVRR  240
MKLYATYLSL GALLPDSESK KKRSAPAIID RALEYIPELE NEIEKLTLKK DNMLSKIENK  300
QRHNQNLQLE HEAPSVLVHE VEKGDVIIQI ICSPNDEKTV FSKLLQNLEA KEKGIISVST  360
LCVCEKRVCY HLHIQMQKDS LATDYVEVLR QDVISWLL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.87510.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951843.10.0uncharacterized protein LOC112497552
TrEMBLA0A067EHU50.0A0A067EHU5_CITSI; Uncharacterized protein
STRINGXP_006471125.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.16e-29bHLH family protein