PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036215m
Common NameCISIN_1g036215mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 290aa    MW: 32189.9 Da    PI: 6.6705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036215mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-172774148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEde+l +++k+ G g+W+t +++ g+ R++k+c++rw +yl
  orange1.1g036215m 27 KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYL 74
                       79******************************99************97 PP
2Myb_DNA-binding452.6e-1485123646
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++E++l+++++++lG++ W++Ia +++ gRt++++k++w++
  orange1.1g036215m  85 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNT 123
                        89***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-231876IPR009057Homeodomain-like
PROSITE profilePS5129416.2622274IPR017930Myb domain
SuperFamilySSF466891.49E-2824121IPR009057Homeodomain-like
SMARTSM007171.5E-122676IPR001005SANT/Myb domain
PfamPF002499.9E-152774IPR001005SANT/Myb domain
CDDcd001673.22E-102974No hitNo description
PROSITE profilePS5129424.16975129IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2477130IPR009057Homeodomain-like
SMARTSM007173.4E-1379127IPR001005SANT/Myb domain
PfamPF002494.4E-1385123IPR001005SANT/Myb domain
CDDcd001671.13E-1085125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRNPSSSSSS DGTKKITPCC SKVGIKKGPW TPEEDEILSN YIKREGEGQW RTLPKRAGLL  60
RCGKSCRLRW MNYLRPSIKR GHIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTRLRKKLI SQGINPTTHK PLIFNQVVHD QLASSSSTSN PNTPSLEIME EAGVSSTHQA  180
AATNFTTNYN IPIDGGFMMG SLLPSSHGHG HNCIGDYIDN CDEDTFSSFL DSLVNDDDFM  240
NHINEQQQQS SVSSYNNIGT IDWEFADVLS TKVGSDDQHG AAASLNDQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25271297108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043308.10.0LOW QUALITY PROTEIN: transcription repressor MYB5
SwissprotQ388506e-84MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A067EVN40.0A0A067EVN4_CITSI; Uncharacterized protein
STRINGXP_006443445.11e-155(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-82myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]