PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036175m

Common Name

CISIN_1g036175mg, LOC102621656

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 362aa MW: 39829.3 Da PI: 4.4786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036175m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00049	313	352	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d+i +a+ L+ ++P a ++K + L +A++Y++sL orange1.1g036175m 313 QSRKDKIHTALRILQGIIPGA----NGKDP-LSLLDEAIDYLQSL 352 56899*************8....55554.66********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.4E-4	313	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-5	314	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVKAHESWIY RQHSAWQLPD LNCMRTSLDP RQPECLPSLI APENYMFSAN AALPGYVSPG 60 FANLKTEQIN GAHKALQILP PRFQNLVASP YPYLNEIQPA FPCGFSEQAA PNEKLGSLQK 120 GLLVFDQSGN QTQLVYSSVC PSVLNTPATL KKEVSVNGFL QDKAIKRDQF TSVKPLLHEE 180 FDENHISGKE CEMHEDTEEI NALLYSDGDD DYSNGDDSED DEVKSTDHSP VAIEGKYEKH 240 DLTLEISEEV ASSDGPNKRQ KLLNGGYNKS SQTDTACSVQ LEGSHECDND AESGYANGQT 300 QKEEIDFILG NMQSRKDKIH TALRILQGII PGANGKDPLS LLDEAIDYLQ SLKLKAVALG 360 V*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVKAHESWIY RQHSAWQLPD LNCMRTSLDP RQPECLPSLI APENYMFSAN AALPGYVSPG  60
FANLKTEQIN GAHKALQILP PRFQNLVASP YPYLNEIQPA FPCGFSEQAA PNEKLGSLQK  120
GLLVFDQSGN QTQLVYSSVC PSVLNTPATL KKEVSVNGFL QDKAIKRDQF TSVKPLLHEE  180
FDENHISGKE CEMHEDTEEI NALLYSDGDD DYSNGDDSED DEVKSTDHSP VAIEGKYEKH  240
DLTLEISEEV ASSDGPNKRQ KLLNGGYNKS SQTDTACSVQ LEGSHECDND AESGYANGQT  300
QKEEIDFILG NMQSRKDKIH TALRILQGII PGANGKDPLS LLDEAIDYLQ SLKLKAVALG  360
V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006494600.1	0.0	transcription factor bHLH143
Refseq	XP_006494601.1	0.0	transcription factor bHLH143
TrEMBL	A0A067DWK4	0.0	A0A067DWK4_CITSI; Uncharacterized protein
STRING	XP_006494600.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67110.1	3e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g036175m
Entrez Gene	102621656