PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036154m | ||||||||
Common Name | CISIN_1g036154mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 21499.8 Da PI: 10.8265 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.2 | 1.1e-19 | 119 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g orange1.1g036154m 119 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 169 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.1E-44 | 7 | 193 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.78E-32 | 119 | 177 | No hit | No description |
PROSITE profile | PS51032 | 23.657 | 120 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-22 | 120 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.2E-13 | 120 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-37 | 120 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 120 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MVNSRHSVIP PVKYTEHRKH TKLMTPFSTN GQEMKPRVVR ISVTDGDATD SSSDEDCEVY 60 KRPRVKKFLS EIMIASSSSS SEIDVVSKSR ISKCKKKKKS GKVGAPATLK PAAKQPAGKK 120 FRGVRQRPWG KWAAEIRDPL RRVRLWLGTY DTAEEAAMVY DNAAIQLRGP DALTNFATPP 180 PKFPSQIKQS LSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 118 | 176 | 3 | 62 | ATERF1 |
3gcc_A | 1e-21 | 118 | 176 | 3 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM466649 | 2e-46 | AM466649.2 Vitis vinifera contig VV78X085330.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439407.1 | 1e-139 | ethylene-responsive transcription factor CRF2 | ||||
Swissprot | Q9SUQ2 | 3e-50 | CRF2_ARATH; Ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A067GCR8 | 1e-140 | A0A067GCR8_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | V4TH44 | 1e-138 | V4TH44_9ROSI; Uncharacterized protein | ||||
STRING | XP_006439407.1 | 1e-138 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 2e-45 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036154m |
Publications ? help Back to Top | |||
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