PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036087m
Common NameCISIN_1g036087mg, LOC102613725
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 345aa    MW: 38841 Da    PI: 7.2584
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036087mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171360148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
  orange1.1g036087m 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                       678*******************************************97 PP
2Myb_DNA-binding58.41.7e-1866109146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
  orange1.1g036087m  66 RGSFTEEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNYWNS 109
                        89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-26563IPR009057Homeodomain-like
PROSITE profilePS5129417.978860IPR017930Myb domain
SuperFamilySSF466893.27E-3010107IPR009057Homeodomain-like
SMARTSM007171.3E-121262IPR001005SANT/Myb domain
PfamPF002494.3E-151360IPR001005SANT/Myb domain
CDDcd001674.90E-111660No hitNo description
PROSITE profilePS5129428.12261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2664115IPR009057Homeodomain-like
SMARTSM007173.9E-1765113IPR001005SANT/Myb domain
PfamPF002498.3E-1766109IPR001005SANT/Myb domain
CDDcd001671.50E-1368108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGHRCCSKQK VKKGLWSPEE DEKLLKHITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNYWNSC IKKKLMSKGL  120
DPKTHILMPS HQRAAASSKI ACNIQLPISS RAFTVSSSQI MSNIVSMEII RPPVLTLPAP  180
TDQFSLLQPT AIPMPPASEY QNPNFVWNAG DQNSQDYSTN FPNYVSSSVD HLRNGPMSSP  240
PCSSLMNPPG FGLTDENYCM WGTNTNIEVP SLEAKLQQQR EKEKNICDRQ APQMEKIDDE  300
ANMDCSFDSS SFDHHLDFVD STLMAGAMCR DFSSFSTDDF AWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422299.10.0transcription factor MYB41
RefseqXP_006493796.10.0transcription factor MYB41
TrEMBLA0A067F5V60.0A0A067F5V6_CITSI; Uncharacterized protein
TrEMBLV4U8D90.0V4U8D9_9ROSI; Uncharacterized protein
STRINGXP_006493796.10.0(Citrus sinensis)
STRINGXP_006422299.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-88myb domain protein 67