PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036058m | ||||||||
Common Name | CISIN_1g036058mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 9288.09 Da PI: 10.7524 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.1 | 1.3e-24 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien + r++tf+kR+ g+ KKA+E+S+LCd+eva+iifs+ gkl orange1.1g036058m 9 KKIENRTYRHITFAKRKSGLVKKAYEISTLCDVEVALIIFSPAGKLI 55 78*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-29 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-26 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-23 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.2E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MGRVRLQIKK IENRTYRHIT FAKRKSGLVK KAYEISTLCD VEVALIIFSP AGKLILFDGK 60 KRLDEILMHF IDLPHHQRAA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-18 | 1 | 79 | 1 | 80 | MEF2C |
5f28_B | 2e-18 | 1 | 79 | 1 | 80 | MEF2C |
5f28_C | 2e-18 | 1 | 79 | 1 | 80 | MEF2C |
5f28_D | 2e-18 | 1 | 79 | 1 | 80 | MEF2C |
6c9l_A | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 1 | 79 | 1 | 80 | Myocyte-specific enhancer factor 2B |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491910.1 | 2e-39 | PREDICTED: MADS-box transcription factor 7-like | ||||
Swissprot | Q9LM46 | 1e-28 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A067GUQ0 | 3e-51 | A0A067GUQ0_CITSI; Uncharacterized protein | ||||
STRING | Gorai.007G219600.1 | 6e-39 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 5e-31 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036058m |
Publications ? help Back to Top | |||
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