PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g036036m | ||||||||
Common Name | CISIN_1g036036mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 99aa MW: 11588.8 Da PI: 10.0215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 88.6 | 1.1e-27 | 6 | 81 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ewyfFs+++kkya++ r++r+t++g Wk tgkd+++ +k ++e++g+kk Lvfy+gr ++++kt+Wv+hey+ orange1.1g036036m 6 DDDEWYFFSEHNKKYANSARTERTTRAGHWKVTGKDRQIWDKnRKEVIGVKKNLVFYEGRGSNAVKTSWVIHEYHS 81 577*************************************9977788***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.759 | 1 | 98 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-27 | 4 | 87 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-13 | 9 | 80 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
QAAIRDDDEW YFFSEHNKKY ANSARTERTT RAGHWKVTGK DRQIWDKNRK EVIGVKKNLV 60 FYEGRGSNAV KTSWVIHEYH SNNASAYQAF SYFTFVFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-18 | 9 | 79 | 70 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043356.1 | 1e-66 | NAC domain-containing protein 71-like | ||||
TrEMBL | A0A067HFK2 | 1e-65 | A0A067HFK2_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006491410.1 | 1e-58 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-25 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g036036m |