PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g035950m

Common Name

CISIN_1g035950mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 321aa MW: 36644.3 Da PI: 8.5696

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g035950m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.5e-31	160	214	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+ LH+rFve+ve LGG+ekAtPk il+lm+++gLt+ hvkSHLQkYR+ orange1.1g035950m 160 KTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT 214 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.84E-17	158	214	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-27	158	215	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	160	214	IPR006447	Myb domain, plants
Pfam	PF00249	9.2E-6	164	213	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-18	243	289	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MKTEKRKVLE QRYSYRSSQE QLPCKVGLSF HSQLPNVEGE GSFKLNPGSC NASGFICSSN 60 FAMPNSVFYA AENCMDFSQD LDNFDLQSSV KVHLQYNQNP SLPKKQPHQD AYRNSPASVF 120 SFMQDPAEEE ASLNERQKCV SFSEYQKHQQ TPNTMTSHSK TRIRWTQHLH NRFVECVEFL 180 GGAEKATPKG ILKLMDIDGL TIFHVKSHLQ KYRTARHIPE GKSKRERTTD LNAIVRLDSE 240 SGMQLVETLK LQLDVQKRLH DQLEVQRNLQ LQIEEQGKQL TQMLDQQLKP NKSLVDSNNL 300 EKQYTLFSSV TRLSVSATVS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	160	217	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387141.2	0.0	myb family transcription factor PHL5-like
TrEMBL	A0A067DTB0	0.0	A0A067DTB0_CITSI; Uncharacterized protein
STRING	XP_006483673.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	6e-55	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g035950m