PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g035883m

Common Name

CISIN_1g035883mg, LOC102628119

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 226aa MW: 25682.2 Da PI: 10.9905

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g035883m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00037	165	195	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + L +++P + +K+s Le+A++YI+ L+ orange1.1g035883m 165 LRVLGRMIPGC-----RKVSSLNLLEEATDYISALE 195 55677788877.....8****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.489	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-7	153	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-6	162	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDSFDESNCD TSLDMEPKRK KRRIGNNDDG GGEDELIRRR QRNDDDDDDD DDSRNAVYRE 60 VTKRWRTDKE QQIYSSKLFQ AVRHVRRRSS SARTGKAIRE TADRLLAVSA KGATRWSRAI 120 LSSPPSLRLK KRQVKVRVTG CSRLRRKPEE AMRRKNKLPP VQKKLRVLGR MIPGCRKVSS 180 LNLLEEATDY ISALEMQVRA MTALTAILAG SSPADDRLGL NVVRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	22	PKRKKRR
2	130	147	KRQVKVRVTGCSRLRRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.9099	0.0	callus

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269\|PubMed:20023194}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006472222.1	1e-162	transcription factor bHLH149
Swissprot	O80482	1e-39	BH149_ARATH; Transcription factor bHLH149
TrEMBL	A0A067H1R5	1e-160	A0A067H1R5_CITSI; Uncharacterized protein
STRING	XP_006472222.1	1e-161	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7664	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	8e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g035883m
Entrez Gene	102628119

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]