PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g035773m
Common NameCISIN_1g035773mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 331aa    MW: 37781 Da    PI: 4.9061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g035773mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.3e-1599147254
                AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         ykGVr+++ +g++ AeIrd +     r  r +lg+f taeeA  a+ + + ++e
  orange1.1g035773m  99 IYKGVRRRP-WGKYSAEIRDpF-----RrVRLWLGTFNTAEEASSAYQKKKHEFE 147
                        69*******.**********66.....45******************98887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-2098139No hitNo description
SuperFamilySSF541717.85E-1599146IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-2099143IPR001471AP2/ERF domain
PfamPF008475.0E-899146IPR001471AP2/ERF domain
PROSITE profilePS5103217.54399161IPR001471AP2/ERF domain
SMARTSM003802.6E-1299145IPR001471AP2/ERF domain
PRINTSPR003672.2E-9100111IPR001471AP2/ERF domain
PRINTSPR003672.2E-9122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPKREGKNLS SMRKVRIIYH DPEATDSSSE EDECYDRKRT QFPGARRCIQ EISLPDFSSE  60
TSEETALQLN DDQSKHDVDI KFDENKKNES KKTQRSSTIY KGVRRRPWGK YSAEIRDPFR  120
RVRLWLGTFN TAEEASSAYQ KKKHEFESMC EGDLKKDKNL SISPTVVVYE RTGGDNTSGS  180
LSPLSPSSVL DVGTSIRLGN ELESPIKKED ACKEKFHDKC NVEKVAKDHN IEKIEEICNV  240
EQHLKEEQPI SYLLEAPYLS PSVTKELGLL DPYTQFQADF AHYYDGFDYS FSEDPSVCES  300
EISKVTGLSK FDHMLEDFAW ADATLDLTCF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440961.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A067F1R10.0A0A067F1R1_CITSI; Uncharacterized protein
STRINGXP_006440961.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-24ERF family protein