PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g035756m
Common NameCISIN_1g035756mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 187aa    MW: 20442.7 Da    PI: 4.7718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g035756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-181565155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s y+GVr +k +g+Wv+eIr+p   g + r++lg+f tae+Aa+a++ a++ ++g
  orange1.1g035756m 15 SSYRGVRKRK-WGKWVSEIREP---GTKSRIWLGSFETAEMAAAAYDVAALHFRG 65
                       67*****999.**********8...325***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-111565IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-221574IPR016177DNA-binding domain
CDDcd000184.99E-241575No hitNo description
PROSITE profilePS5103223.8411673IPR001471AP2/ERF domain
SMARTSM003804.6E-391679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-321674IPR001471AP2/ERF domain
PRINTSPR003671.7E-101728IPR001471AP2/ERF domain
PRINTSPR003671.7E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDAKSLNSFH GGTSSSYRGV RKRKWGKWVS EIREPGTKSR IWLGSFETAE MAAAAYDVAA  60
LHFRGREARL NFPELVTSLP KPASSNAEDI RMAAHEAALR LRNTSAGSTS EEAGGGSTSG  120
GSSLGPVTVR LSPSQIQAIN DSTMDSPKMW MDQMAEELML EQNMMFSNEF EGDEWNDMQS  180
DSLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-171778668ATERF1
3gcc_A1e-171778668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045509.11e-135ethylene-responsive transcription factor ERF021
SwissprotQ9C9I28e-66ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A067ELE61e-133A0A067ELE6_CITSI; Uncharacterized protein
STRINGXP_006478382.11e-111(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-55ERF family protein