PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g035661m
Common NameCISIN_1g035661mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 212aa    MW: 23920.8 Da    PI: 8.3381
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g035661mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.7e-172373656
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       ++++eq+++Le+ F  ++++++e + +LA++lg++ rqV vW+qN+Ra++k
  orange1.1g035661m 23 RLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWK 73
                       689***********************************************9 PP
2HD-ZIP_I/II98.56.1e-3221111393
        HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        k+rl++eqv++LE+sF++++kL++e K +la++Lg+ +rqvavW+qn+RAR+kt+ lE dy++++ ++++  ++++rLek+v+ L+eel++
  orange1.1g035661m  21 KKRLNQEQVRVLERSFTTKKKLDTELKLKLANQLGVPARQVAVWYQNKRARWKTQSLELDYNTIQVKLENALADKRRLEKDVKLLKEELRQ 111
                        99*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.7871575IPR001356Homeobox domain
SMARTSM003894.4E-131779IPR001356Homeobox domain
SuperFamilySSF466895.13E-161883IPR009057Homeodomain-like
CDDcd000861.61E-122176No hitNo description
PfamPF000461.0E-142373IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-172382IPR009057Homeodomain-like
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDIADTQQNQ KHPPPNKLNI KKRLNQEQVR VLERSFTTKK KLDTELKLKL ANQLGVPARQ  60
VAVWYQNKRA RWKTQSLELD YNTIQVKLEN ALADKRRLEK DVKLLKEELR QAQEILFAKL  120
MTSNNNNNQE AVEAITCNNN SNYSSATSCS AEKAGSCSSF SLLHEEYHVH GNDHDHDQGL  180
QIDHELFACL IGNGGHSNSS GWERNLAGAL S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451774.11e-144homeobox-leucine zipper protein ATHB-52
RefseqXP_006464812.11e-144homeobox-leucine zipper protein ATHB-52
TrEMBLA0A067E2G91e-155A0A067E2G9_CITSI; Uncharacterized protein
STRINGXP_006464812.11e-143(Citrus sinensis)
STRINGXP_006451774.11e-143(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-24homeobox protein 52