PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g034429m
Common NameCISIN_1g034429mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 96aa    MW: 10598.9 Da    PI: 4.8793
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g034429mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.85.1e-262078260
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
       HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                       Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Y
  orange1.1g034429m 20 FLIKTYDMVDDSSTDEIVSWSDNKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTY 78
                       9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-261693IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-271679IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.53E-261683IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.0E-222078IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-152043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-155870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-157183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
METSAASGGP GGLGGGPAPF LIKTYDMVDD SSTDEIVSWS DNKNSFVVWN PPEFARLLLP  60
TYFKHNNFSS FIRQLNTYVQ IIINKSFLWN HDNAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-179781787Heat shock factor protein 1
5d5v_B4e-179781787Heat shock factor protein 1
5d5v_D4e-179781787Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492535.13e-50heat stress transcription factor A-5
SwissprotQ7XHZ02e-29HFB4B_ORYSJ; Heat stress transcription factor B-4b
SwissprotQ94BZ52e-29HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A067DGG85e-64A0A067DGG8_CITSI; Uncharacterized protein
STRINGXP_006492535.11e-49(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.13e-31HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]