PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g033547m
Common NameCISIN_1g033001mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 118aa    MW: 12727.8 Da    PI: 10.6297
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g033547mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-181751135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C  C+tt TplWR gp g+++LCnaCG++yrk+++
  orange1.1g033547m 17 CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 51
                       889*****************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2571165IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-141162IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-151269No hitNo description
Gene3DG3DSA:3.30.50.107.6E-171369IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.72E-131668No hitNo description
PfamPF003201.6E-161751IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401742IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MMKSPPAGTF NEMNKSCIDC HTTRTPLWRG GPAGPRSLCN ACGIRYRKTK KLALLGRDKG  60
RAQKRKRKYS SNNNNNKGAT KLGISLKAGL MAVGSDMGEE EQAAILLMSL SYGCLYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045165.12e-79GATA transcription factor 16 isoform X2
SwissprotQ9FJ102e-28GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A067HGB01e-80A0A067HGB0_CITSI; Uncharacterized protein
STRINGXP_006444444.18e-79(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-29GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]