PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g033001m
Common NameCISIN_1g033001mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 130aa    MW: 14201.5 Da    PI: 10.5439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g033001mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.4e-182963135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C  C+tt TplWR gp g+++LCnaCG++yrk+++
  orange1.1g033001m 29 CIDCHTTRTPLWRGGPAGPRSLCNACGIRYRKTKK 63
                       889*****************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.2572377IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-142374IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.52E-152481No hitNo description
Gene3DG3DSA:3.30.50.109.6E-172581IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.15E-132880No hitNo description
PfamPF003201.9E-162963IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDVKTKRREA EEMMKSPPAG TFNEMNKSCI DCHTTRTPLW RGGPAGPRSL CNACGIRYRK  60
TKKLALLGRD KGRAQKRKRK YSSNNNNNKG ATKLGISLKA GLMAVGSDMG EEEQAAILLM  120
SLSYGCLYA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444444.18e-89GATA transcription factor 16 isoform X3
TrEMBLA0A067HGB04e-90A0A067HGB0_CITSI; Uncharacterized protein
STRINGXP_006444444.13e-88(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2289534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-30GATA transcription factor 16