PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032773m
Common NameCISIN_1g030547mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YB
Protein Properties Length: 135aa    MW: 14869 Da    PI: 9.6894
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032773mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB90.61.6e-2827824398
              NF-YB 43 isfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98
                        sf+++ asdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre+eg++k
  orange1.1g032773m 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTK 82
                       59***************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576132No hitNo description
PRINTSPR006152.2E-111937No hitNo description
SuperFamilySSF471137.68E-192791IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.5E-232891IPR009072Histone-fold
PfamPF008081.5E-62855IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-113856No hitNo description
PRINTSPR006152.2E-115775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MARSLRMLRI LYRNVSLSSS ASLPASFSFL SCRASDKCQK EKRKTINGDD LLWAMATLGF  60
EDYIDPLKAY LMRYREMEGD TKGSARGGDG SAKRDTIGAL PGQNAQYALQ GPLNYANPHV  120
TFSLLHLISF LLTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-1728764593NF-YB
4awl_B1e-1728764694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-1728764694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.48161e-140flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436200.17e-62nuclear transcription factor Y subunit B-1 isoform X1
RefseqXP_006485940.17e-62nuclear transcription factor Y subunit B-1
SwissprotQ8VYK46e-41NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067DNX72e-94A0A067DNX7_CITSI; Uncharacterized protein
STRINGXP_006485940.13e-61(Citrus sinensis)
STRINGXP_006436200.13e-61(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-41nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]