PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g032729m

Common Name

CISIN_1g032729mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HSF

Protein Properties

Length: 136aa MW: 15941.4 Da PI: 10.5422

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g032729m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	66.8	4.9e-21	1	55	40	103
THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 40 vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103 +LpkyFkh+nf+SF+RQLn+YgFkk++ ++ weF+h++F++g ++ll +i rkks+ orange1.1g032729m 1 MLPKYFKHNNFSSFIRQLNTYGFKKTSPKQ---------WEFRHDKFRRGCRHLLVEIVRKKSD 55 59**********************9988.........********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-19	1	47	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.0E-10	1	13	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SMART	SM00415	1.6E-7	1	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-17	1	52	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.67E-15	2	52	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.0E-10	14	26	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MLPKYFKHNN FSSFIRQLNT YGFKKTSPKQ WEFRHDKFRR GCRHLLVEIV RKKSDPSVFP 60 AYLKAASNEG SIASAAGKEH NNHLLLMEEN ESLKRERLQL QMQIAEFKAL EIKLLDSLSQ 120 YMGNFNHQNK VRRLC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467808.1	1e-96	heat stress transcription factor B-2a-like
TrEMBL	A0A067GKT3	8e-96	A0A067GKT3_CITSI; Uncharacterized protein
TrEMBL	A0A2H5N3X9	1e-94	A0A2H5N3X9_CITUN; Uncharacterized protein
STRING	XP_006467808.1	5e-96	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16597	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	3e-25	heat shock factor 4

Link Out ? help Back to Top
Phytozome	orange1.1g032729m