PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032677m | ||||||||
Common Name | CISIN_1g032677mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 15771.4 Da PI: 5.2555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 24 | 66 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W Ed+l+ +a +++ + +W +Ia+ ++ g+++ ++++++ orange1.1g032677m 24 WNRSEDKLFEHALVMFPEEspdRWQKIASQLP-GKSAVEVREHY 66 999**************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.4E-10 | 20 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.17E-12 | 22 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 22 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-8 | 23 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.19E-8 | 24 | 70 | No hit | No description |
PROSITE profile | PS50090 | 6.957 | 24 | 70 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MYQQDIKNDD SNNNSFAMTH STHWNRSEDK LFEHALVMFP EESPDRWQKI ASQLPGKSAV 60 EVREHYEALV HDVYEIDSGR VELPSYADDS DWDSPSQISF APKSTKHGDP ERKKGTPWTE 120 EEHKLFLIGL KKIRQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 24 | 86 | 11 | 73 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445756.2 | 9e-95 | transcription factor SRM1 | ||||
Refseq | XP_006485458.1 | 9e-95 | transcription factor SRM1 | ||||
TrEMBL | A0A067DIT2 | 4e-97 | A0A067DIT2_CITSI; Uncharacterized protein | ||||
STRING | XP_006445756.1 | 3e-94 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-45 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032677m |