PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032564m
Common NameCISIN_1g028980mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family YABBY
Protein Properties Length: 139aa    MW: 15690.6 Da    PI: 10.4107
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032564mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY134.81.1e-4143111101170
              YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        + +  ++++++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  orange1.1g032564m  43 M-RTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 111
                        2.2223334444569*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-4112111IPR006780YABBY protein
SuperFamilySSF470951.96E-853104IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.4E-559105IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAAAFQSLSW QDVHHHQAPS YASPECRIDL GSSSKCNNKI SAMRTPTNKA TEERVVNRPP  60
EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLEANNQPK  120
LDDASGNRLM SRTALRNK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117341e-120callus| flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677442e-60KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBankKJ6677462e-60KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450896.11e-99axial regulator YABBY 5 isoform X2
RefseqXP_006475869.11e-99axial regulator YABBY 5 isoform X2
SwissprotQ8GW462e-51YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A067GXR63e-99A0A067GXR6_CITSI; Uncharacterized protein
TrEMBLA0A067GY392e-98A0A067GY39_CITSI; Uncharacterized protein
TrEMBLV4TUG23e-99V4TUG2_9ROSI; Uncharacterized protein
TrEMBLV4UP202e-98V4UP20_9ROSI; Uncharacterized protein
STRINGXP_006475868.13e-95(Citrus sinensis)
STRINGXP_006450895.13e-95(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-54YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]