PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032564m | ||||||||
Common Name | CISIN_1g028980mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | YABBY | ||||||||
Protein Properties | Length: 139aa MW: 15690.6 Da PI: 10.4107 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 134.8 | 1.1e-41 | 43 | 111 | 101 | 170 |
YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + ++++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl orange1.1g032564m 43 M-RTPTNKATEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 111 2.2223334444569*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-41 | 12 | 111 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 53 | 104 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.4E-5 | 59 | 105 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MAAAFQSLSW QDVHHHQAPS YASPECRIDL GSSSKCNNKI SAMRTPTNKA TEERVVNRPP 60 EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLEANNQPK 120 LDDASGNRLM SRTALRNK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11734 | 1e-120 | callus| flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 2e-60 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667746 | 2e-60 | KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450896.1 | 1e-99 | axial regulator YABBY 5 isoform X2 | ||||
Refseq | XP_006475869.1 | 1e-99 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 2e-51 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067GXR6 | 3e-99 | A0A067GXR6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067GY39 | 2e-98 | A0A067GY39_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TUG2 | 3e-99 | V4TUG2_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4UP20 | 2e-98 | V4UP20_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475868.1 | 3e-95 | (Citrus sinensis) | ||||
STRING | XP_006450895.1 | 3e-95 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-54 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032564m |
Publications ? help Back to Top | |||
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