PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032472m | ||||||||
Common Name | CISIN_1g032472mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 141aa MW: 16586.1 Da PI: 10.0271 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.3 | 6.2e-36 | 5 | 131 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrF+Pt+ee++ Lkkk + ++++ ++ike+d y+++PwdLp+ +++ eek wyf+++r k+a++k+++r tksgyWk tgk ++ orange1.1g032472m 5 VGFRFKPTNEEII-SLLKKKRLDPDFSV-HTIKEIDFYSFDPWDLPRhsEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDI 94 7************.89*****9999999.78**************94357788999************************************ PP NAM 93 lsk.kgelvglkktLvfy.kgrapkgektdWvmheyr 127 ++k ++e++g+kk+L f + +a+k kt+Wvmhe + orange1.1g032472m 95 KRKnSTEVIGTKKILPFCpRRSASKKAKTEWVMHEIS 131 *9966778**********766889999********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.801 | 3 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-35 | 4 | 137 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-18 | 5 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MDSLVGFRFK PTNEEIISLL KKKRLDPDFS VHTIKEIDFY SFDPWDLPRH SEIQCEEKVW 60 YFYCERYYKS AKSKQAHRRT KSGYWKVTGK GSDIKRKNST EVIGTKKILP FCPRRSASKK 120 AKTEWVMHEI SVGDDPLYKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-21 | 6 | 129 | 20 | 139 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-21 | 6 | 129 | 20 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-21 | 6 | 129 | 20 | 139 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-21 | 6 | 129 | 20 | 139 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swm_B | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swm_C | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swm_D | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swp_A | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swp_B | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swp_C | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
3swp_D | 1e-21 | 6 | 129 | 23 | 142 | NAC domain-containing protein 19 |
4dul_A | 1e-21 | 6 | 129 | 20 | 139 | NAC domain-containing protein 19 |
4dul_B | 1e-21 | 6 | 129 | 20 | 139 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015382149.1 | 2e-97 | NAC domain-containing protein 40-like, partial | ||||
TrEMBL | A0A067DPF5 | 3e-99 | A0A067DPF5_CITSI; Uncharacterized protein | ||||
STRING | XP_006465074.1 | 5e-95 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 8e-30 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032472m |