PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032369m
Common NameCISIN_1g032227mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LSD
Protein Properties Length: 143aa    MW: 14865.5 Da    PI: 7.9229
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032369mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.2e-132852125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCr+lL YP GA+sV+Ca+C++V
  orange1.1g032369m 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                       ************************9 PP
2zf-LSD146.84.7e-156791125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggC+tlL+Y rGA+sV+C++C+tV
  orange1.1g032369m 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                       ************************9 PP
3zf-LSD141.91.6e-13105129125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+Cr lL+Y +GA+sV+Ca+C++V
  orange1.1g032369m 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.5E-424126No hitNo description
TIGRFAMsTIGR010539.5E-132555IPR005735Zinc finger, LSD1-type
SuperFamilySSF486953.77E-528126IPR011031Multihaem cytochrome
PfamPF069431.4E-102852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.4E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.8E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069439.8E-13105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT AVGVSNHIFF LV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.8630.0fruit
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022737650.13e-91protein LOL1
RefseqXP_022737651.13e-91protein LOL1
SwissprotQ93ZB15e-76LOL1_ARATH; Protein LOL1
TrEMBLA0A067E7G33e-96A0A067E7G3_CITSI; Uncharacterized protein
TrEMBLA0A2H5QJ373e-96A0A2H5QJ37_CITUN; Uncharacterized protein
STRINGXP_006485443.16e-91(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.35e-62lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]