PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g032324m
Common NameCISIN_1g032324mg, LOC102616788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 144aa    MW: 15946.5 Da    PI: 9.5013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g032324mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001133721054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  orange1.1g032324m 33 KERKEKLGERIIALQQLVSPY-----GKTDTASVLWEAMEYIQFL 72
                       677888889999999999998.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.92E-52177No hitNo description
Gene3DG3DSA:4.10.280.101.2E-92283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6742372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-122485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-42978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMENKRSPCA VDQGSLPTLT SKRHKADLSI SAKERKEKLG ERIIALQQLV SPYGKTDTAS  60
VLWEAMEYIQ FLHEQVKVLS APYLQSMPAA KVQELEQYSL RNRGLCLVPI SCTAGVARSN  120
GADIWAPIKT TSPKFEKAIT QFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.11681e-157callus| fruit| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442818.11e-104transcription factor bHLH153
RefseqXP_006442819.11e-104transcription factor bHLH153
RefseqXP_006478624.11e-104transcription factor bHLH153
RefseqXP_006478627.11e-104transcription factor bHLH153
RefseqXP_024954143.11e-104transcription factor bHLH153
SwissprotQ7XJU23e-66BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A067FKP21e-102A0A067FKP2_CITSI; Uncharacterized protein
TrEMBLA0A2H5NX861e-102A0A2H5NX86_CITUN; Uncharacterized protein
TrEMBLV4VSH71e-102V4VSH7_9ROSI; Uncharacterized protein
STRINGXP_006478624.11e-103(Citrus sinensis)
STRINGXP_006442817.11e-103(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-68bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]