PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032324m | ||||||||
Common Name | CISIN_1g032324mg, LOC102616788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 144aa MW: 15946.5 Da PI: 9.5013 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.8 | 0.00011 | 33 | 72 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + a++L +A+eYI+ L orange1.1g032324m 33 KERKEKLGERIIALQQLVSPY-----GKTDTASVLWEAMEYIQFL 72 677888889999999999998.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.92E-5 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-9 | 22 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.674 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-12 | 24 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-4 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MMENKRSPCA VDQGSLPTLT SKRHKADLSI SAKERKEKLG ERIIALQQLV SPYGKTDTAS 60 VLWEAMEYIQ FLHEQVKVLS APYLQSMPAA KVQELEQYSL RNRGLCLVPI SCTAGVARSN 120 GADIWAPIKT TSPKFEKAIT QFH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1168 | 1e-157 | callus| fruit| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442818.1 | 1e-104 | transcription factor bHLH153 | ||||
Refseq | XP_006442819.1 | 1e-104 | transcription factor bHLH153 | ||||
Refseq | XP_006478624.1 | 1e-104 | transcription factor bHLH153 | ||||
Refseq | XP_006478627.1 | 1e-104 | transcription factor bHLH153 | ||||
Refseq | XP_024954143.1 | 1e-104 | transcription factor bHLH153 | ||||
Swissprot | Q7XJU2 | 3e-66 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A067FKP2 | 1e-102 | A0A067FKP2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NX86 | 1e-102 | A0A2H5NX86_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VSH7 | 1e-102 | V4VSH7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478624.1 | 1e-103 | (Citrus sinensis) | ||||
STRING | XP_006442817.1 | 1e-103 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 1e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032324m |
Entrez Gene | 102616788 |
Publications ? help Back to Top | |||
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