PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032247m | ||||||||
Common Name | CISIN_1g032247mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 145aa MW: 16763.8 Da PI: 6.626 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.1 | 1.1e-29 | 7 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G++F+P+de l+v Lk+k + ++ ik++ +i+++eP dL + ++++e++ +yfF + + ky++++r +r +++g Wk t +d + orange1.1g032247m 7 QGYKFQPSDE-LIVSLLKEKRLDPHFLY-GPIKDIgHICNLEPGDLATesETDSEDRACYFFYEPRYKYRNSNRVHRRAEAGHWKITSEDSQ 96 7*******95.77799*99999998777.88****99*********8423666688899********************************* PP NAM 92 vlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + + ++ l+g+kk L+fy+ ++ ++ktdWvmhey++ orange1.1g032247m 97 IEA-SNGLIGTKKFLTFYRRspGSKVPVKTDWVMHEYHV 134 **9.8889**********6522344557*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-31 | 4 | 140 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.985 | 5 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-15 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MESHMGQGYK FQPSDELIVS LLKEKRLDPH FLYGPIKDIG HICNLEPGDL ATESETDSED 60 RACYFFYEPR YKYRNSNRVH RRAEAGHWKI TSEDSQIEAS NGLIGTKKFL TFYRRSPGSK 120 VPVKTDWVMH EYHVKDDPSY EVCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-13 | 2 | 134 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.766 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465071.1 | 6e-90 | NAC domain-containing protein 7-like | ||||
TrEMBL | A0A067EHP2 | 1e-105 | A0A067EHP2_CITSI; Uncharacterized protein | ||||
STRING | XP_006465071.1 | 2e-89 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 9e-20 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032247m |