PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032112m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 148aa MW: 15910 Da PI: 10.2203 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.3 | 2.5e-19 | 36 | 70 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ orange1.1g032112m 36 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.4 | 30 | 66 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-13 | 30 | 71 | No hit | No description |
SMART | SM00401 | 2.9E-14 | 30 | 83 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.5E-16 | 34 | 70 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.43E-13 | 35 | 70 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 36 | 61 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.7E-17 | 36 | 70 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MMDPSDKGFE SDEVNSSGSK RLDGVSSDEN SIKKTCADCG TTKTPLWRGG PAGPKSLCNA 60 CGIRSRKKRR AILGITKEEK KSKRGNSNSS SNSSSNKLGD SLKQRLYALG REVLMQRSSV 120 EKQRKTLGEE EQAAVLLMAL SYGSVYA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006419440.1 | 1e-102 | GATA transcription factor 16 | ||||
Refseq | XP_006488880.1 | 1e-102 | GATA transcription factor 16-like | ||||
Swissprot | Q8LG10 | 5e-50 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2H5N6B4 | 1e-101 | A0A2H5N6B4_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S1V4 | 1e-101 | V4S1V4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006488880.1 | 1e-102 | (Citrus sinensis) | ||||
STRING | XP_006419440.1 | 1e-102 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-47 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032112m |
Publications ? help Back to Top | |||
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