PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032052m | ||||||||
Common Name | CISIN_1g032052mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 16350.6 Da PI: 7.1795 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.1 | 2.3e-13 | 2 | 36 | 11 | 45 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgk 45 vtfskRr+g++KKA+E ++ ++av++fs+ g+ orange1.1g032052m 2 VTFSKRRQGLFKKAQEYANITGSQIAVLVFSPAGN 36 9*******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.264 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-16 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.4E-6 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-15 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 6 | 21 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 21 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MVTFSKRRQG LFKKAQEYAN ITGSQIAVLV FSPAGNPYVH GSPSFDAVID KFLSVNGGAS 60 SSGQVGAHHN EADVCRTPTP FHLVLQNHHN EADVCRGFLM ALEDKIKRCR SAEDLSAVKA 120 ELEEVRVKVL QRLKHIEEDE FVTSLLNC* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015388538.1 | 1e-107 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2H5QI52 | 1e-106 | A0A2H5QI52_CITUN; Uncharacterized protein | ||||
STRING | XP_006442526.1 | 1e-106 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20144 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-17 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032052m |