PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g031966m | ||||||||
Common Name | CISIN_1g031966mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 16684.5 Da PI: 11.1279 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H orange1.1g031966m 22 FECKTCNRQFPSFQALGGHRASH 44 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00019 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H orange1.1g031966m 68 HECSICGQEFAMGQALGGHMRRH 90 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.2E-13 | 21 | 46 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.6E-9 | 21 | 90 | No hit | No description |
SMART | SM00355 | 0.16 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 22 | 49 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.1E-4 | 66 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.7E-11 | 68 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.847 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.095 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MLLTRSNRAK LPIKKRLASD VFECKTCNRQ FPSFQALGGH RASHKKPRLI NGETKTLSST 60 TATKPKLHEC SICGQEFAMG QALGGHMRRH RIAMNESLNS AVIVSQSPPV LRRSNSSRRV 120 FGLDLNLTPL ENDLEVLFGK MAPKVDLLMT * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429010.1 | 1e-106 | zinc finger protein ZAT11 | ||||
Refseq | XP_006480743.1 | 1e-106 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 3e-44 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A067DZU3 | 1e-106 | A0A067DZU3_CITSI; Uncharacterized protein | ||||
STRING | XP_006480743.1 | 1e-106 | (Citrus sinensis) | ||||
STRING | XP_006429010.1 | 1e-106 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-46 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g031966m |