PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g031935m | ||||||||
Common Name | CISIN_1g031935mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 151aa MW: 17764 Da PI: 6.7178 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.3 | 3.1e-32 | 2 | 131 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 G++F+P+d el+ + Lk+k + +++ ++ ik++ +i+++ePwdLp+ k+++e++ yfF + + ky++++r r t++g Wk t +d orange1.1g031935m 2 ESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIdHICSLEPWDLPTesKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQWKITSEDS 92 67*******9.6888***********999888****66**********523555566677******************************** PP NAM 91 evlskkgelvglkktLvfy.kg.rapkgektdWvmheyrl 128 ++ + ++ l+g+kk L+fy +g +++ ++ktdW+mhey++ orange1.1g031935m 93 HIEA-GNGLTGTKKFLTFYcRGpDSKVPVKTDWLMHEYHV 131 ***9.999***********7555667788*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.975 | 1 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.75E-32 | 3 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-15 | 3 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MESGYKFQPS DELILRLLKE KRLNPHFSQH HPIKDIDHIC SLEPWDLPTE SKTESEDQVF 60 YFFYEPRYKY RNSNRVDRRT EAGQWKITSE DSHIEAGNGL TGTKKFLTFY CRGPDSKVPV 120 KTDWLMHEYH VKDDPHYEAV LKCTSLLPIT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-13 | 1 | 131 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.9205 | 1e-135 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465072.1 | 6e-95 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024040379.1 | 6e-95 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A067D7V7 | 1e-109 | A0A067D7V7_CITSI; Uncharacterized protein | ||||
STRING | XP_006465072.1 | 2e-94 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 3e-21 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g031935m |